KEY MARKERS

   Gut Commensals

  • Akkermansia muciniphila
  • Enterobacteriaceae
  • Butyrivibrio
  • Alloprevotella
  • Faecalibacterium prausnitzii
  • Roseburia intestinalis
  • Eubacterium rectale 
  • Bifidobacterium
  • Blautia
  • Bacteroides vulgatus
  • Coprococcus
  • Prevotella
  • Lachnospiraceae
  • Lactobacillus
  • Roseburia 
  • Clostridium
  • Faecalibacterium
  • Ruminococcaceae
  • Bacteroidetes
  • Ruminococcus spp
  • Enterobacteriaceae
  • Escherichia coli
  • Bifidobacterium adolescentis 
  • Bacteroides 
  • Dialister invisus
  • Enterococcus
  • Ruminococcus gnavus 
  • Veillonella
  • Ruminococcus 
  • Haemophilus
  • Bacteroidales
  • Bacteroides caccae
  • Bifidobacterium animalis
  • Blautia hydrogenotrophica
  • Christensenella minuta
  • Clostridium hathewayi
  • Clostridium ramosum
  • Clostridium symbiosum
  • Eggerthella lenta
  • Oscillospira
  • Blautia obeum
  • Collinsella
  • Phascolarctobacterium
  • Hafnia
  • Parabacteroides
  • Ruminococcus bromii
  • Bacteroides
  • Eubacterium
  • Ruminococcus gnavus
  • Marvinbryantia
  • Bifidobacterium catenulatum
  • Dorea
  • Enterobacteriaceae
  • Methanobrevibacter smithii
  • Ruminococcus
  • Bifidobacterium adolescentis
  • Enterococcus
  • Desulfovibrio piger
  • Roseburia
  • Fusobacterium
  • Streptococcus
  • Eubacterium rectale
  • Atopobium parvulum
  • Catenibacterium
  • Klebsiella aerogenes
  • Escherichia coli
  • Prevotella copri
  • Solobacterium moorei
  • Streptococcus species
  • Tyzzerella
  • Tyzzerella 4
  • Atopobium
  • Lactobacillus ruminis
  • Lactobacillus sakei
  • Bradyrhizobiaceae
  • Clostridiales incertae sedis iv
  • Lactobacillaceae
  • Blautia
  • Butyricimonas
  • Coprococcus
  • Desulfovibrio
  • Veillonellaceae
  • Lachnospiraceae
  • Alistipes
  • Holdemania
  • Bacillus subtilis
  • β-galactosidase producing bacteria
  • β-glucuronidase producing bacteria
  • Acinetobacter
  • Enterococcus species
  • Methanobrevibacter smithii
  • Staphylococcus species
  • Fusobacterium
  • Methanobrevibacter smithii
  • Streptococcus thermophilus
  • Clostridium
  • Porphyromonas gingivalis
  • Proteus mirabilis
  • Pseudobutyrivibrio
  • Bifidobacterium
  • Lactobacillus
  • Staphylococcaceae
  • Clostridiales incertae sedis iv
  • Staphylococcus epidermidis
  • Staphylococcus pasteuri
  • Clostridia clusters IV
  • Clostridia clusters XIVa
  • Clostridia clusters xviii
  • Enterococcus gallinarum
  • Actinomyces
  • Bacteroides
  • Propionibacterium freudenreichi
  • Bifidobacterium animalis subspecies lactis
  • Lactobacillus animalis
  • Streptococcus spp.
  • Lactobacillus spp.
  • Clostridium species
  • Peptostreptococcus species
  • Enterococcus spp.
  • Staphylococcus
  • Lactobacillus bulgaricus
  • Lactobacillus plantarum
  • Clostridium spp
  • Eubacterium spp
  • Clostridiales Family XIV Incertae Sedis
  • Enterobacteria
  • Faecalibacterium prausnitzii
  • Streptococci
  • Lactobacillus
  • Lactococcus
  • Leuconostoc
  • Pediococcus
  • Bacillus coagulans
  • Bifidobacterium bifidum
  • Bifidobacterium breve
  • Bifidobacterium infantis
  • Bifidobacterium lactis
  • Bifidobacterium longum
  • Escherichia coli nissle
  • Lactobacillus acidophilus
  • Lactobacillus brevis
  • Lactobacillus casei
  • Lactobacillus fermentum
  • Lactobacillus paracasei
  • Lactobacillus reuteri
  • Lactobacillus rhamnosus
  • Lactobacillus rhamnosus GG
  • Lactobacillus salivarius
  • Saccharomyces boulardii
  • Streptococcus thermophilus
  • Bifidobacterium dentium
  • Mycoplana
  • Pseudomonas

Gut Commensals - Risk Category

 Gut Inflammatory Markers

 Digestion and Immune Balance

  • Intestinal permeability
  • Intestinal Gas
  • SIBO
  • Irritable Bowel Syndrome
  • Inflammatory bowel disease
  • Autoimmune Health
  • Metabolic Health
  • Liver Health
  • Hormones
  • Nutrition
  • Cardiovascular Health
  • Neurological Health
  • Probiotic Health
  • Keystone Health
  • Beta defensin 2 (ng/mL)
  • Lysozyme (ng/mL)
  • MMP 9 (ng/mL)
  • S100A12 (mcg/ml)
  • Calprotectin (mcg/g)
  • Fecal lactoferrin (mcg/ml)
  • Fecal Eosinophil Protein X (mcg/g)

 

  • Pancreatic elastase 1 (mcg/g)
  • Fecal Immunochemical Test (FIT)
  • Fecal Zonulin (ng/mL)
  • pHsIgA (mcg/g)

 

    Gut Antibodies

    Malabsorption

    Gut Metabolites

    • Lipopolysaccharide antibody
    • Anti-Saccharomyces cerevisiae antibody
    • Tissue transglutaminase
    • Deamidated gliadin peptide
    • Fecal Anti Gliadin (U/L)
    • Actin antibody

     

    • Meat fiber
    • Vegetable fiber
    • Total Fecal Fat (mg/g)
    • Total Fecal Triglycerides (mg/g)
    • Long chain fatty acids (mg/g)
    • Total Cholesterol (mg/g)
    • Total Phospholipids (mg/g)
    • Acetate (%)
    • Butyrate (%)
    • Chenodeoxycholic acid (CDCA) (%)
    • Cholic acid (CA) (%)
    • Deoxycholic acid (DCA) (%)
    • LCA/DCA ratio
    • Lithocholic acid (LCA) (%)
    • Propionate (%)
    • ß-glucuronidase (U/mL)
    • Total Short chain fatty acids (micromol/g)
    • Valerate (%)

     

     Gut Diversity Indices

    Gut Phyla

    Antibiotic Resistance Genes

    • Shannon's Diversity Index
    • Simpson's Diversity Index
    • Firmicutes/Bacteroidetes
    • Prevotella/Bacteroidetes (P/B)

     

    • Intestinal permeability
    • Intestinal Gas
    • SIBO
    • Irritable Bowel Syndrome
    • Inflammatory bowel disease
    • Autoimmune Health
    • Metabolic Health
    • Liver Health
    • Hormones
    • Nutrition
    • Cardiovascular Health
    • Neurological Health
    • Probiotic Health
    • Keystone Health
    • Helicobacter - Clarithromycin
    • Helicobacter - Fluoroquinolones
    • Fluoroquinolones
    • Vancomycin
    • b-lactamase
    • Macrolides
    • Tetracycline 
    • Aminoglycoside 
    • Bactrim 
    • Carbapenem
    • Rifampin
    • Polymyxins

    Gut Pathogens

    • Clostridium difficile
    • Adenovirus F40/41
    • Aeromonas spp.
    • Ancylostoma duodenale
    • Ascaris lumbricoides
    • Astrovirus
    • Bacillus cereus
    • Balantidium coli
    • Blastocystis hominis
    • Campylobacter coli
    • Campylobacter jejuni 
    • Campylobacter spp.
    • Campylobacter upsaliensis 
    • Candida albicans
    • Candida glabrata
    • Candida spp. 
    • Chilomastix mesnili
    • Clostridium difficile
    • Clostridium difficile Toxin A Gene 
    • Clostridium difficile Toxin B Gene
    • Clostridium perfringens
    • Cryptosporidium
    • Cyclospora cayetanensis 
    • Cyclospora spp.
    • Cytomegalovirus 
    • Dientamoeba fragilis

     

    • Diphyllobothrium latum 
    • Dipylidium caninum
    • E.coli O157
    • Edwardsiella tarda
    • Endolimax nana 
    • Entamoeba coli
    • Entamoeba histolytica 
    • Enteroaggregative E.coli (EAEC)
    • Enterobius vermicularis
    • Enteropathogenic E.coli (EPEC)
    • Enterotoxigenic E.coli (Etec) Lt/St 
    • Enterovirus
    • Epstein-Barr virus
    • Fasciola/Fasciolopsis
    • Geotrichum spp.
    • Giardia lamblia
    • Helicobacter pylori 
    • Human bocavirus
    • Hymenolepis 
    • Isospora belli
    • Klebsiella pneumoniae
    • Larval nematode
    • Listeria spp.
    • Mansonella 
    • Microsporidia spp.
    • Necator americanus

     

      • Non-pylori Helicobacter spp.
      • Norovirus GI
      • Norovirus GII
      • Pentatrichomonas hominis 
      • Plesiomonas shigelloides
      • Rhodotorula spp. 
      • Rotavirus A
      • Salmonella spp.
      • Sapovirus I
      • Sapovirus II
      • Sapovirus IV
      • Sapovirus V 
      • Schistosoma
      • Shiga-Like Toxin Producing E.coli (STEC)
      • Stx1/Stx2
      • Shigella/EIEC
      • Staphylococcus aureus
      • Strongyloides stercoralis 
      • Taenia solium
      • Taenia spp.
      • Trichomonas hominis 
      • Trichuris trichiura
      • Vibrio cholerae
      • Vibrio parahaemolyticus 
      • Vibrio vulnificus
      • Yersinia enterocolitica